Please use this identifier to cite or link to this item: http://repositorio.ufla.br/jspui/handle/1/41287
metadata.artigo.dc.title: Genome sequencing and transcript analysis of Hemileia vastatrix reveal expression dynamics of candidate effectors dependent on host compatibility
metadata.artigo.dc.creator: Porto, Brenda Neves
Caixeta, Eveline Teixeira
Mathioni, Sandra Marisa
Vidigal, Pedro Marcus Pereira
Zambolim, Laércio
Zambolim, Eunize Maciel
Donofrio, Nicole
Polson, Shawn W.
Maia, Thiago Andrade
Chen, Chuming
Adetunji, Modupe
Kingham, Brewster
Dalio, Ronaldo José Durigan
Resende, Mário Lúcio Vilela de
metadata.artigo.dc.subject: Coffee - Diseases
Genome sequencing
Gene expression
Café - Doenças e pragas
Sequenciamento de genoma
Expressão gênica
metadata.artigo.dc.publisher: PLOS
metadata.artigo.dc.date.issued: 2019
metadata.artigo.dc.identifier.citation: PORTO, B. N. et al. Genome sequencing and transcript analysis of Hemileia vastatrix reveal expression dynamics of candidate effectors dependent on host compatibility. Plos One, San Francisco, v. 14, n. 4, 2019. DOI 10.6084/m9.figshare.7940411
metadata.artigo.dc.description.abstract: Coffee leaf rust caused by the fungus Hemileia vastatrix is one of the most important leaf diseases of coffee plantations worldwide. Current knowledge of the H. vastatrix genome is limited and only a small fraction of the total fungal secretome has been identified. In order to obtain a more comprehensive understanding of its secretome, we aimed to sequence and assemble the entire H. vastatrix genome using two next-generation sequencing platforms and a hybrid assembly strategy. This resulted in a 547 Mb genome of H. vastatrix race XXXIII (Hv33), with 13,364 predicted genes that encode 13,034 putative proteins with transcriptomic support. Based on this proteome, 615 proteins contain putative secretion peptides, and lack transmembrane domains. From this putative secretome, 111 proteins were identified as candidate effectors (EHv33) unique to H. vastatrix, and a subset consisting of 17 EHv33 genes was selected for a temporal gene expression analysis during infection. Five genes were significantly induced early during an incompatible interaction, indicating their potential role as pre-haustorial effectors possibly recognized by the resistant coffee genotype. Another nine genes were significantly induced after haustorium formation in the compatible interaction. Overall, we suggest that this fungus is able to selectively mount its survival strategy with effectors that depend on the host genotype involved in the infection process.
metadata.artigo.dc.identifier.uri: http://repositorio.ufla.br/jspui/handle/1/41287
metadata.artigo.dc.language: en_US
Appears in Collections:DFP - Artigos publicados em periódicos



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