Alternative models in genetic analyses of carcass traits measured by ultrasonography in Guzerá cattle: a bayesian approach

Abstract

The objective was to study alternative models for genetic analyses of carcass traits assessed by ultrasonography in Guzerá cattle. Data from 947 measurements (655 animals) of Rib-eye area (REA), rump fat thickness (RFT) and backfat thickness (BFT) were used. Finite polygenic models (FPM), infinitesimal polygenic models (IPM) and FPM combined with IPM (IPM + FPM) were empirically tested, adjusting for the effects of permanent environment, age and weight at measurement and the contemporary group. A Bayesian analysis using the computer package FlexQTLTM was adopted. The combined model adjusted to the data, allowing reliable genetic analyses of REA and BFT. For the RFT, the IPM model was the only one to have convergence and, in this case, the trait should be analyzed by a polygenic model. The presence of up to three major genes (MGs) controlling the expression of REA and two MGs for BFT was detected. The additive genetic action was over dominance to REA, and for BFT the dominance genetic action was greater. Heritability estimates, and respective standard error, adjusted for the combined model to REA were 0.15 (0.00025) for the polygenic fraction and 0.10 (0.00019) for the oligogenic fraction; for BFT was 0.19 (0.00027) and 0.13 (0.00025), respectively. Heritability of 0.17 (0.00028) was estimated for RFT when the model was adjusted to IPM. There are major genes segregating within the population studied for REA and BFT traits, thus, their genetic analyses must be studied considering oligogenic effects. The major gene effects detected for a small number of genes, may possibly help to increase the reliability in detecting chromosomal regions that explain and control the phenotypic expression of these traits, facilitating research on detection and validation of molecular markers in this population.